| Protein ZmMADS30 | |
|---|---|
|
ZmMADS30 is a protein in the MADS family.
|
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| Information | |
| TF Name: | ZmMADS30 |
| Species: | Maize |
| TF Family: | MADS |
| Gene Name(Synonym): | MADS30 |
| Uniprot ID: | K7UIP1 |
Protein ZmMADS30
ZmMADS30 is a protein in the MADS family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00319 | PF01486 | |
| Zm00001eb423130_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d025479 | DAPseq |  |
sequence | fimo | position |
| Zm00001d025479 | DAPseq |  |
sequence | fimo | position |
| Zm00001d025479 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d025479 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMADS30 is the regulator
Interactions where ZmMADS30 is the target
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Zm00001eb423130_T001 from maize genome v5
Amino Acid Sequence
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MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00319 |
|
| PF01486 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ATCTGCCTCATCCAGTGCAAGAGGG...
ATCTGCCTCATCCAGTGCAAGAGGGAGATCAAACTGGCCACAGCAGTCTCAGAAGCTAGTCAAAACTAGTGGGAGGCTGTGTGCACAGAACTAGAAAAGAAAAGGCTTGGAGATCGAATGGCTCGTGGTAAGGTTCAGATGAGGAGGATAGAGAACCCAGTGCACCGGCAGGTCACCTTCTGCAAGCGGCGAATGGGCCTGCTGAAGAAAGCTAGGGAGTTGTCTGTTCTCTGTGACGCTGCTATCGGTGTCATCGTGATCTCCCCCCATGGCAAGATCTATGACTTAGCCACCAATGGGAACATGCAAGGTTTGATCGAGAGGTACAGGAGAGCCTGTTCAGAAATGCATGGCGAAAGTAGCAACCACAACGAAACTCAGACGATAAAACAAGAGGTGTTAGCATTAACGCATGAAATTGATTTGCTTCAAAAGGGATTCAGGTACATGCATGGAGAGAATGATATAAACCACATGAATCTTGTCGAGCTCCAGACCCTGGAAAATAATCTTGAAATGTGGGCAAATAACATTCGCTCCCAGAAGATGCAGATCATCTCCAGGGAGATTGACATGCTCAGGAACAAGGAGGCCATACTGCAGGCTGTCAATGGCGTGCTTCAGGAAAGGATAATCGAGCAGAATGGGATTCTGAATTTCAGCGGCACGGCGATGACACCGTCCCAGCTAACCATGGAGAGTAACTACTATTTGTAGGCAAAGCTGTCATCCTACGAATTTATATACGTTTGGTTCCGAAAATGTATGGTGTTTCATTTTGTTCCAAGTCAAACATCTTGACCAAGTTTGTAGAAAATACAGTAACAATCTACATACAATACGGAATAAATGCACTACAGCTCATATTTAATTGTGGATTTAATTAACTAAGGG
GRMZM2G069370_T01 from maize genome v3
Amino Acid Sequence
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MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
Nucleotide Sequence
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GCTTCCATGGTGGATCCAAGTCGCC...
GCTTCCATGGTGGATCCAAGTCGCCATCTGCCTCATCCAGTGCAAGAGGGAGATCAAACTGGCCACAGCAGTCTCAGAAGCTAGTCAAAACTAGTGGGAGGCTGTGTGCACAGAACTAGAAAAGAAAAGGCTTGGAGATCGAATGGCTCGTGGTAAGGTTCAGATGAGGAGGATAGAGAACCCAGTGCACCGGCAGGTCACCTTCTGCAAGCGGCGAATGGGCCTGCTGAAGAAAGCTAGGGAGTTGTCTGTTCTCTGTGACGCTGCTATCGGTGTCATCGTGATCTCCCCCCATGGCAAGATCTATGACTTAGCCACCAATGGGAACATGCAAGGTTTGATCGAGAGGTACAGGAGAGCCTGTTCAGAAATGCATGGCGAAAGTAGCAACCACAACGAAACTCAGACGATAAAACAAGAGGTGTTAGCATTAACGCATGAAATTGATTTGCTTCAAAAGGGATTCAGGTACATGCATGGAGAGAATGATATAAACCACATGAATCTTGTCGAGCTCCAGACCCTGGAAAATAATCTTGAAATGTGGGCAAATAACATTCGCTCCCAGAAGATGCAGATCATCTCCAGGGAGATTGACATGCTCAGGAACAAGGAGGCCATACTGCAGGCTGTCAATGGCGTGCTTCAGGAAAGGATAATCGAGCAGAATGGGATTCTGAATTTCAGCGGCACGGCGATGACACCGTCCCAGCTAACCATGGAGAGTAACTACTATTTGTAGGCAAAGCTGTCATCCTACGAATTTATATACGTTTGGTTCCGAAAATGTATGGTGTTTCATTTTGTTCCAAGTCAAACATCTTGACCAAGTTTGTAGAAAATACAGTAACAA
Zm00001d025479_T001 from maize genome v4
Amino Acid Sequence
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MARGKVQMRRIENPVHRQVTFCKRRMGLLKKARELSVLCDAAIGVIVISPHGKIYDLATNGNMQGLIERYRRACSEMHGE
SSNHNETQTIKQEVLALTHEIDLLQKGFRYMHGENDINHMNLVELQTLENNLEMWANNIRSQKMQIISREIDMLRNKEAI
LQAVNGVLQERIIEQNGILNFSGTAMTPSQLTMESNYYL
Nucleotide Sequence
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ATCTGCCTCATCCAGTGCAAGAGGG...
ATCTGCCTCATCCAGTGCAAGAGGGAGATCAAACTGGCCACAGCAGTCTCAGAAGCTAGTCAAAACTAGTGGGAGGCTGTGTGCACAGAACTAGAAAAGAAAAGGCTTGGAGATCGAATGGCTCGTGGTAAGGTTCAGATGAGGAGGATAGAGAACCCAGTGCACCGGCAGGTCACCTTCTGCAAGCGGCGAATGGGCCTGCTGAAGAAAGCTAGGGAGTTGTCTGTTCTCTGTGACGCTGCTATCGGTGTCATCGTGATCTCCCCCCATGGCAAGATCTATGACTTAGCCACCAATGGGAACATGCAAGGTTTGATCGAGAGGTACAGGAGAGCCTGTTCAGAAATGCATGGCGAAAGTAGCAACCACAACGAAACTCAGACGATAAAACAAGAGGTGTTAGCATTAACGCATGAAATTGATTTGCTTCAAAAGGGATTCAGGTACATGCATGGAGAGAATGATATAAACCACATGAATCTTGTCGAGCTCCAGACCCTGGAAAATAATCTTGAAATGTGGGCAAATAACATTCGCTCCCAGAAGATGCAGATCATCTCCAGGGAGATTGACATGCTCAGGAACAAGGAGGCCATACTGCAGGCTGTCAATGGCGTGCTTCAGGAAAGGATAATCGAGCAGAATGGGATTCTGAATTTCAGCGGCACGGCGATGACACCGTCCCAGCTAACCATGGAGAGTAACTACTATTTGTAGGCAAAGCTGTCATCCTACGAATTTATATACGTTTGGTTCCGAAAATGTATGGTGTTTCATTTTGTTCCAAGTCAAACATCTTGACCAAGTTTGTAGAAAATACAGTAACAA
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